Method and use for verification of mounting errors in genomes

NOVELTY – The method involves reducing genome in words of size k. The k is size of a genome sub word, and word and frequency of words are calculated. Sum of frequencies of words is calculated for type of operator, and ratios of frequency of two equations are applied. The error of assembly is detected when the variation is higher than the 0.01. USE – Method for verification of mounting errors in genomes. ADVANTAGE – The method enables reducing quantity of errors in assembly and level of reconstruction of original molecule, and allows final quality check of one genome.

Main Application Field

B04 (Natural products and polymers. Including testing of body fluids (other than blood typing or cell counting), pharmaceuticals or veterinary compounds of unknown structure, testing of microorganisms for pathogenicity, testing of chemicals for mutagenicity or human toxicity and fermentative production of DNA or RNA. General compositions.); D16 (Fermentation industry – including fermentation equipment, brewing, yeast production, production of pharmaceuticals and other chemicals by fermentation, microbiology, production of vaccines and antibodies, cell and tissue culture and genetic engineering.); T01 (Digital Computers)

INVENTORS:

HERAI ROBERTO HIROCHI
YAMAGISHI MICHEL EDUARDO BELEZA

632_GENOMAS

Patent number: BR102012031096-A2

PATENT STATUS:

For information contact Inova Unicamp

FOR ADDITIONAL INFORMATION:

parcerias@inova.unicamp.br

+55 (19) 3521-5207 / 2607

This technology profile has been automatically generated.